- #ASREML PLUS HOW TO#
- #ASREML PLUS INSTALL#
- #ASREML PLUS ZIP FILE#
- #ASREML PLUS MANUAL#
- #ASREML PLUS WINDOWS#
The asremlPlus package is distributed under the MIT licence - for details see LICENSE.md.Business development and commercialisation It also imports dae, ggplot2, stats, methods, utils, reshape, plyr, dplyr, stringr, RColorBrewer, grDevices,
#ASREML PLUS ZIP FILE#
It can be purchased from 'VSNi' as asreml-R, who will supply a zip file for local installation/updating. It provides a computationally efficient algorithm for fitting mixed models using Residual Maximum Likelihood.
To use those functon in asremlPlus that are methods for asreml or asrtests objects, you must have a licensed version of the package asreml.
#ASREML PLUS MANUAL#
(vii) Response transformation functions, andįor a list of the functions for each group, see the help for asremlPlus-package or the entry in the manual for asremlPlus-package. (vi) Prediction production and presentation functions, The content falls into the following natural groupings: They can be accessed via vignette(name, package = "asremlPlus"), where name is one of "Wheat.analysis", "Criteria", "Ladybird.asreml" or "Ladybird.lm". The use of the package is exemplified in four vignettes: Wheat.analysis vignette, Criteria vignette, Ladybird asreml vignette and Ladybird lm vignette. As a general rule functions that are methods for asreml and asrtests objects require asreml-R on the other hand, functions that are methods for alldiffs and ame objects do not require asreml-R. It can also be used to display, in tables and graphs, predictions obtained from a mixed model using your favourite model fitting functions and to explore differences between predictions. Procedures are available for choosing models that conform to the hierarchy or marginality principle. A history of the fitting of a sequence of models is kept in a data frame. It assists in automating the testing of terms in mixed models when asreml-R is used Install.packages(c("dae", "ggplot2", "reshape", "plyr", "dplyr", "stringr", "RColorBrewer", "foreach", "parallel", "doParallel")) What is does
#ASREML PLUS INSTALL#
Otherwise, you will need to install its dependencies manually: If you have not previously installed asremlPlus then you could first install it and its dependencies from CRAN using: Version 2.0-12 of the package is available from CRAN so that you could first install it and its dependencies using: Next, install asremlPlus from GitHub by entering:ĭevtools::install_github("briencj/asremlPlus"). First, make sure devtools is installed, which, if you do not have it, can be done as follows: Directly from GitHubĪsremlPlus is an R package available on GitHub, so it can be installed from the RStudio console or an R command line session using the devtools command install_github. Installation instructions are available there.
#ASREML PLUS WINDOWS#
Windows binaries and source tarballs of the latest version of asremlPlus are available for installation from my repository. Installing the package From a repository using drat The vignettes can be accessed via vignette(name, package = "asremlPlus"), where name is one of "Wheat.analysis", "Criteria", "Ladybird.asreml" or "Ladybird.lm".
#ASREML PLUS HOW TO#
Two further vignettes show how to use asremlPlus for exploring and presenting predictions from a linear mixed model analysis in the context of a three-factor factorial experiment on ladybirds: one vignette, Ladybird.asreml vignette, uses asreml and asremlPlus to produce and present predictions the other vignette, Ladybird.lm vignette, uses lm to produce the predictions and asremlPlus to present the predictions. A second vignette is the Criteria vignette that illustrates the facilities in asremlPlus for producing and using information criteria. It that shows how to select the terms to be included in a mixed model for an experiment that involves spatial variation it also illustrates diagnostic checking and prediction production and presentation for this example. In particular, an example of its use is given towards the bottom of the help information and this is avalable as the Wheat.analysis vignette. More informationįor more information install the package and run the R command news(package = “asremlPlus”) or consult the manual.Īn overview can be obtained using ?asremlPlus. In particular, most functions are S3 methods and so the type of the object can be omitted from the function name when calling the function. Versions 4.x-xx of asremlPlus are a major revamp of the package and include substantial syntax changes. This version is compatible with both ASReml-R versions 3 and 4.1, but not 4.0. AsremlPlus is an R package that augments the use of ASReml-R in fitting mixed models and packages generally in exploring prediction differences.
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